WebChIPseeker-package ChIP-SEQ Annotation, Visualization and Comparison Description This package is designed for chip-seq data analysis Details Package: ChIPseeker Type: Package Version: 1.5.1 Date: 27-04-2015 biocViews: ChIPSeq, Annotation, Software Depends: Imports: methods, ggplot2 Suggests: clusterProfiler, GOSemSim License: … WebFeb 19, 2016 · covplot help · Issue #27 · YuLab-SMU/ChIPseeker · GitHub. YuLab-SMU / ChIPseeker Public. Notifications. Fork. Actions.
ChIPseeker: ChIPseeker for ChIP peak Annotation, …
WebAug 31, 2024 · 第7篇:用Y叔的ChIPseeker对peaks进行注释和可视化. 上一步骤(第6篇:重复样本的处理——IDR)用IDR对重复样本peaks的一致性进行了评估,同时得到了merge后的一致性的peaks——sample-idr,接下来就是对peaks的注释。 这篇主要介绍用Y叔的R包ChIPseeker对peaks的位置(如peaks位置落在启动子、UTR、内含子等 ... WebDec 12, 2024 · The text was updated successfully, but these errors were encountered: gps wilhelmshaven personalabteilung
ChIPseeker: an R package for ChIP peak Annotation, Comparison …
WebConverting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker 1 7.4 years ago dally 210 I have a .narrowPeak file of Pol IIthat has called peaks using MACS2 and has annotated the peaks using HOMER. I am attempting to visualize the peaks using the covplot command in the Bioconductor package "ChIPseeker". WebI also works with the function readPeakFile btw. The issue itself, is due to the different chomosome notations when reading with my function or directly - one makes ensembl like notations, whereas ChIPseeker creates UCSC type. This seems to … WebJul 26, 2016 · ChIPseeker is an R package for annotating ChIP-seq data analysis. It supports annotating ChIP peaks and provides functions to visualize ChIP peaks coverage over chromosomes and profiles of peaks binding to TSS regions. Comparison of ChIP peak profiles and annotation are also supported. gps wilhelmshaven